Opened 14 years ago
Last modified 14 years ago
#229 assigned task
Implement API for additional GenePattern web services
| Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
|---|---|---|---|
| Priority: | critical | Milestone: | ZZ GenePattern integration v1.0 |
| Component: | net.sf.basedb.genepattern | Keywords: | |
| Cc: |
Description
The GenePattern API includes an API for accessing some parts of the web services on a GenePattern server. But it turns out that there are a lot more web services that we might want to use. For example, we might want to abort a job.
A list with all web services including the wsdl can be found at: http://genepattern.broad.mit.edu/gp/services
Change History (8)
comment:1 by , 14 years ago
comment:2 by , 14 years ago
| Status: | new → assigned |
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comment:3 by , 14 years ago
(In [1115]) References #229: Implement API for additional GenePattern web services
Added wrapper classes.
comment:4 by , 14 years ago
comment:5 by , 14 years ago
| Priority: | major → critical |
|---|
comment:6 by , 14 years ago
(In [1118]) References #229: Implement API for additional GenePattern web services
The test servlet now use the wrapper classes when possible.
comment:7 by , 14 years ago
comment:8 by , 14 years ago
(In [1130]) References #229: Implement API for additional GenePattern web services
Added convenience method that waits (interruptable) for a GP job to complete.
It seems like this doesn't need to be very complicated at all. There are several (undocumented) classes in the
org.genepattern.webservicethat seems to have the desired functionality. For example:AdminProxywhich can get information about installed modules and suites.AnalysisWebServiceProxywhich manages jobsA simple solution would be to wrap a
GPClient,AdminProxy,AnalysisWebServiceProxy, etc. in our own class and just expose the functionality that we need. This also has the benefit that all GenePattern-dependent code is located in a single place. We may just as well create wrappers forParameterInfo,TaskInfoas well...