Opened 15 years ago

Closed 15 years ago

Last modified 15 years ago

#217 closed task (fixed)

GCT exporter

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: critical Milestone: ZZ GenePattern integration v1.0
Component: net.sf.basedb.genepattern Keywords:


Create an exporter that can export a bioassay set to GCT format. This file format is used as input to lots of GenePattern modules and is essential before further functionality can be developed. It should not be very difficult since there is a good description at

One thing to note is that genes/reporters must be unique, which means that we must always merge on reporter when exporting to this format. Support for this already exists in the AbstractBioAssaySetExporter class.

Change History (3)

comment:1 by Nicklas Nordborg, 15 years ago

Status: newassigned

comment:2 by Nicklas Nordborg, 15 years ago

Resolution: fixed
Status: assignedclosed

(In [1091]) Fixes #217: GCT exporter

comment:3 by Nicklas Nordborg, 15 years ago

(In [1092]) References #217: GCT exporter

Make sure assay names are unique in the GCT file

Note: See TracTickets for help on using tickets.