#217 closed task (fixed)
GCT exporter
| Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
|---|---|---|---|
| Priority: | critical | Milestone: | ZZ GenePattern integration v1.0 |
| Component: | net.sf.basedb.genepattern | Keywords: | |
| Cc: |
Description
Create an exporter that can export a bioassay set to GCT format. This file format is used as input to lots of GenePattern modules and is essential before further functionality can be developed. It should not be very difficult since there is a good description at http://www.broad.mit.edu/cancer/software/genepattern/tutorial/gp_fileformats.html#gct
One thing to note is that genes/reporters must be unique, which means that we must always merge on reporter when exporting to this format. Support for this already exists in the AbstractBioAssaySetExporter class.
Change History (3)
comment:1 by , 15 years ago
| Status: | new → assigned |
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comment:2 by , 15 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
comment:3 by , 15 years ago
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(In [1091]) Fixes #217: GCT exporter