#195 closed enhancement (fixed)
net.sf.basedb.normalizers: Normalizers should ask user for how to calculate averages
| Reported by: | Jari Häkkinen | Owned by: | Martin Svensson |
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| Priority: | major | Milestone: | ZZ Normalization package v1.1 |
| Component: | net.sf.basedb.normalizers | Keywords: | |
| Cc: |
Description
The Average Normalization plug-in always use the geometric mean but this assumes that data is not logged before normalization. However, for logged intensities arithmetic mean makes more sense.
Related to http://base.thep.lu.se/ticket/1120
Change History (7)
comment:1 by , 16 years ago
| Status: | new → assigned |
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comment:2 by , 16 years ago
| Resolution: | → fixed |
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| Status: | assigned → closed |
follow-up: 4 comment:3 by , 16 years ago
| Resolution: | fixed |
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| Status: | closed → reopened |
BASE 2.12 is required.
Build.xml, base-plugins.xml and requirement-info in documentation should be updated.
comment:4 by , 16 years ago
Replying to martin:
BASE 2.12 is required.
Build.xml, base-plugins.xml and requirement-info in documentation should be updated.
wiki too.
comment:5 by , 16 years ago
(In [1084]) References #195 Updates everything except documentation/wiki, cause current links on the web go to the trunk. Updating them needs to wait until it's time for next release (version 1.1). Also updated the svn-ignore property for some directories/files, mostely of the ignored files are generated by the c++ part of this package.
comment:6 by , 16 years ago
| Resolution: | → fixed |
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| Status: | reopened → closed |
comment:7 by , 3 years ago
| Milestone: | Normalization package v1.1 → ZZ Normalization package v1.1 |
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Milestone renamed
(In [1060]) Fixes #195 Normalizers should ask user for how to calculate averages