Opened 16 years ago
Last modified 15 years ago
#169 new defect
Running two "New root bioassay set" jobs at the same time makes the second to finish crash
Reported by: | Nicklas Nordborg | Owned by: | Jari Häkkinen |
---|---|---|---|
Priority: | major | Milestone: | ZZ Other tickets |
Component: | se.lu.thep.affymetrix | Keywords: | |
Cc: |
Description
Moved from http://base.thep.lu.se/ticket/1224.
This is at least true or affymetrix. I wanted to create two new root bioassay sets by runnign two different plugins. The first to finish ended succesfully, the second finished with the below message. Nothing strange really but can it be avoided?
Error: Permission denied: The item RawBioAssay[id=14538] was modified by another transaction. net.sf.basedb.core.ItemModifiedException: Permission denied: The item RawBioAssay[id=14538] was modified by another transaction. at net.sf.basedb.core.HibernateUtil.commit(HibernateUtil.java:1025) at net.sf.basedb.core.DbControl.commit(DbControl.java:410) at se.lu.thep.affymetrix.AbstractExternalBinaryPlugin.run(AbstractExternalBinaryPlugin.java:264) at net.sf.basedb.core.PluginExecutionRequest.invoke(PluginExecutionRequest.java:106) at net.sf.basedb.clients.jobagent.executors.ThreadJobExecutor.executeJob(ThreadJobExecutor.java:109) at net.sf.basedb.clients.jobagent.executors.ThreadJobExecutor.main(ThreadJobExecutor.java:202) Caused by: org.hibernate.StaleObjectStateException: Row was updated or deleted by another transaction (or unsaved-value mapping was incorrect): [net.sf.basedb.core.data.RawBioAssayData#14538] at org.hibernate.persister.entity.AbstractEntityPersister.check(AbstractEntityPersister.java:1792) at org.hibernate.persister.entity.AbstractEntityPersister.update(AbstractEntityPersister.java:2435) at org.hibernate.persister.entity.AbstractEntityPersister.updateOrInsert(AbstractEntityPersister.java:2335) at org.hibernate.persister.entity.AbstractEntityPersister.update(AbstractEntityPersister.java:2635) at org.hibernate.action.EntityUpdateAction.execute(EntityUpdateAction.java:115) at org.hibernate.engine.ActionQueue.execute(ActionQueue.java:279) at org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:263) at org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:168) at org.hibernate.event.def.AbstractFlushingEventListener.performExecutions(AbstractFlushingEventListener.java:321) at org.hibernate.event.def.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:50) at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1027) at org.hibernate.impl.SessionImpl.managedFlush(SessionImpl.java:365) at org.hibernate.transaction.JDBCTransaction.commit(JDBCTransaction.java:137) at net.sf.basedb.core.HibernateUtil.commit(HibernateUtil.java:1016) ... 5 more
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