Opened 7 days ago

Closed 7 days ago

#1634 closed defect (fixed)

Can't start mutational signature analysis for structural variant calls

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: blocker Milestone: Reggie v5.5.2
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

Seems like it is always saying: 

Skipping NNNNNN.1.l.d.a.lib.g.a.v: There are no translocations or variants >1kb size [breakpoints.bedpe]

Seems like there is an incorrect test numUsableEntries > 0 before starting the loop to check the bedpe file in [7994] (in MutationalSignatureHandler.java).

Change History (1)

comment:1 by Nicklas Nordborg, 7 days ago

Resolution: → fixed
Status: new → closed

In 8004:

Fixes #1634: Can't start mutational signature analysis for structural variant calls

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