Opened 3 hours ago
#1630 new task
Implement support for library preparation that uses Illumina Unique Dual indexes
Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
---|---|---|---|
Priority: | major | Milestone: | Reggie v5.6 |
Component: | net.sf.basedb.reggie | Keywords: | |
Cc: |
Description
The current library preparation pipeline only support the TruSeqSingle
barcodes (with names starting with AD) and pool layouts are hard-coded into the various wizards.
Since we already have support for other barcode types in other places it should be possible to do something like this:
- Assign a
BarcodeSet
annotation to a library preparation protocol. If not specified we use theTruSeqSingle
as default. - Pool layouts still need to be coded into the wizards, but they should now also be able to use barcodes from the actual
BarcodeSet
. - The "Create flow cell" wizard must support a second index read and default values depend on the barcode length.
- Maybe something more...
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