Opened 3 hours ago

#1630 new task

Implement support for library preparation that uses Illumina Unique Dual indexes

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Reggie v5.6
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

The current library preparation pipeline only support the TruSeqSingle barcodes (with names starting with AD) and pool layouts are hard-coded into the various wizards.

Since we already have support for other barcode types in other places it should be possible to do something like this:

  • Assign a BarcodeSet annotation to a library preparation protocol. If not specified we use the TruSeqSingle as default.
  • Pool layouts still need to be coded into the wizards, but they should now also be able to use barcodes from the actual BarcodeSet.
  • The "Create flow cell" wizard must support a second index read and default values depend on the barcode length.
  • Maybe something more...

Change History (0)

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