Opened 9 months ago

Closed 9 months ago

#1567 closed defect (fixed)

Incorrect count of READS in the WGS import wizard

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Reggie v4.52.2
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

I discovered that the python code that is splitting a single FASTQ file into multiple files depending on flow cell id and lane has bug when counting the number of reads. It is missing the last read and the last file to be created is off by one and so is the total number of reads for all merged bioassays. The bug should be easy to fix, but it is not trivial to know which file that is the last one with an incorrect count so we probably have to check all current files and use a batch update to fix the incorrect values in the database.

Change History (1)

comment:1 by Nicklas Nordborg, 9 months ago

Resolution: fixed
Status: newclosed

In 7576:

Fixes #1567: Incorrect count of READS in the WGS import wizard

Also added a check for an already exising FASTQ file which should never happen unless the reads in the FASTQ has been re-ordered.

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