Opened 9 months ago
Closed 9 months ago
#1567 closed defect (fixed)
Incorrect count of READS in the WGS import wizard
Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
---|---|---|---|
Priority: | major | Milestone: | Reggie v4.52.2 |
Component: | net.sf.basedb.reggie | Keywords: | |
Cc: |
Description
I discovered that the python code that is splitting a single FASTQ file into multiple files depending on flow cell id and lane has bug when counting the number of reads. It is missing the last read and the last file to be created is off by one and so is the total number of reads for all merged bioassays. The bug should be easy to fix, but it is not trivial to know which file that is the last one with an incorrect count so we probably have to check all current files and use a batch update to fix the incorrect values in the database.
Note:
See TracTickets
for help on using tickets.
In 7576: