Opened 4 months ago

Closed 4 months ago

#1559 closed defect (fixed)

The "View genotypes" dialog should support gzipped VCF files

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: minor Milestone: Reggie v4.51
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

See #1363 that implemented support for using gzipped VCF files when checking genotypes. When the check is complete the result table have icons for opening a dialog for viewing details of the VCF files. This results in a an error message: 

File 'xxxx_genotypes.vcf.gz' line 101: Could not find header line starting with '#CHROM{tab}POS...'

This is probably due to not decompressing the gzipped file before parsing it.

Change History (1)

comment:1 by Nicklas Nordborg, 4 months ago

Resolution: → fixed
Status: new → closed

In 7520:

Fixes #1559: The "View genotypes" dialog should support gzipped VCF files

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