Opened 8 months ago

Closed 8 months ago

#1520 closed enhancement (fixed)

Output a file with values used in the allelic imbalance test

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Reggie v4.49.1
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

Since it takes a while to test different values for the tau parameter it would be nice to have some idea what the actual values are for each segment. If this information is outputted to a tab-separated file it would be easier to find a proper tau value that is splitting the desired segments.

Change History (3)

comment:1 by Nicklas Nordborg, 8 months ago

In 7336:

References #1520: Output a file with values used in the allelic imbalance test

The imbalance test information is saved to imbalance.test.txt file which can be viewed from the confirmation wizard.

comment:2 by Nicklas Nordborg, 8 months ago

In 7338:

References #1520: Output a file with values used in the allelic imbalance test

Added an icon to the confirmation wizard that opens the imbalance.test.txt file in a popup window.

comment:3 by Nicklas Nordborg, 8 months ago

Resolution: → fixed
Status: new → closed
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