Opened 6 months ago

Closed 6 months ago

Last modified 6 months ago

#1509 closed enhancement (fixed)

Improve searching for variants on chrM

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Variant Search v1.9
Component: net.sf.basedb.varsearch Keywords:
Cc:

Description

Normally when searching for variants on a specific chromosome it is enough to use for example, chr1. This works for chromosome 1 to 22, X and Y, but not not for variants on the 'M' chromosome. A workaround is to use chrom:chrM.

Change History (2)

comment:1 by Nicklas Nordborg, 6 months ago

Resolution: fixed
Status: newclosed

In 7304:

Fixes #1509: Improve searching for variants on chrM

It is now possible to search with chrM to find all variants on the M chromosome and chrM:1234 to find a variant on a specific coordinate on the M chromosome.

comment:2 by Nicklas Nordborg, 6 months ago

Milestone: Variant Search 1.9Variant Search v1.9

Milestone renamed

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