Opened 2 years ago

Closed 2 years ago

#1444 closed enhancement (fixed)

Implement support for submitting jobs to a specific Slurm partition (=queue)

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Reggie v4.42
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

This is done by adding -p <name-of-partion> to the parameter list for sbatch.

It should be possible to define usable partions in the reggie-config.xml file similar to how priorities are defined. The information need to be propagated to each wizard and displayed as a selection list for the user.

When auto-confirm is used, the new jobs should use the same partition only if the job is started on the same cluster. If a new cluster is selected, the default partition should be used.

Change History (7)

comment:1 by Nicklas Nordborg, 2 years ago

In 6977:

References #1444: Implement support for submitting jobs to a specific Slurm partition

Added <partations> configuration to reggie-config.xml.

comment:2 by Nicklas Nordborg, 2 years ago

In 6979:

References #1444: Implement support for submitting jobs to a specific Slurm partition

Added support for selecting a partition to the "Start Hisat 2023 alignment" wizard.

comment:3 by Nicklas Nordborg, 2 years ago

In 6980:

References #1444: Implement support for submitting jobs to a specific Slurm partition

Added a selection list to all wizards. Not implemented in servlets and job submissions yet.

comment:4 by Nicklas Nordborg, 2 years ago

In 6981:

References #1444: Implement support for submitting jobs to a specific Slurm partition

Fixed in the servlets and job submitting code.

comment:5 by Nicklas Nordborg, 2 years ago

In 6982:

References #1444: Implement support for submitting jobs to a specific Slurm partition

Fixed for auto-confirm handlers.

comment:6 by Nicklas Nordborg, 2 years ago

In 6986:

References #1444: Implement support for submitting jobs to a specific Slurm partition

Updated opengrid.jar to version 1.8.

comment:7 by Nicklas Nordborg, 2 years ago

Resolution: fixed
Status: newclosed
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