Opened 2 years ago

Closed 2 years ago

#1438 closed enhancement (fixed)

Check for mismatches between the suffix in the SCANB_ID and the Sample type

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Reggie v4.42
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

We found a JSON file with a SCANB_ID ending with C', but with Sample Type=Operationspreparat. The 'C' suffix indicates that the sample should be a SpecimenCoreBiopsy instead. In this case we should trust the suffix and only register a warning.

Change History (1)

comment:1 by Nicklas Nordborg, 2 years ago

Resolution: → fixed
Status: new → closed

In 6967:

Fixes #1438: Check for mismatches between the suffix in the SCANB_ID and the Sample type

A warning is issued if the two values don't match, and the value derived from the SCANB_ID is used.

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