Opened 10 months ago
Closed 9 months ago
#1402 closed task (fixed)
Implement a new Hisat/Stringtie pipeline
Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
---|---|---|---|
Priority: | major | Milestone: | Reggie v4.40 |
Component: | net.sf.basedb.reggie | Keywords: | |
Cc: |
Description
The existing Hisat/Stringtie? pipeline is getting old. There a newer versions of almost all programs that are used and there are also new versions of genome references.
It should be possible to run the new pipeline in parallel with the existing pipeline. The existing pipeline may be modified to save less data, but this remains to be decided.
The existing pipeline also include additional analysis step (eg. variant calling, SSP, etc) that may not be immediately available in the new pipeline.
Change History (23)
comment:1 Changed 10 months ago by
comment:3 Changed 9 months ago by
Milestone: | Relax v1.x → Reggie v4.40 |
---|---|
Status: | new → accepted |
comment:23 Changed 9 months ago by
Resolution: | → fixed |
---|---|
Status: | accepted → closed |
Note: See
TracTickets for help on using
tickets.
In 6795: