Opened 8 months ago

Closed 8 months ago

Last modified 8 months ago

#1356 closed enhancement (fixed)

Return results for all genotypes when the query include af, vd or dp fields

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Variant Search v1.4
Component: net.sf.basedb.varsearch Keywords:
Cc:

Description

The targeted genotypes index include both variants (0/1, 1/1) and 0/0 genotypes. In most cases a query will only return results for variants (see [6380]). The exception is if the query include the gt: term. It would be useful to extend the exception to other fields that are related to the data for the individual sample as opposed to data fields that are related to the gene or gene annotations. The fields are: allele frequency (af:), depth (dp:) and variant depth (vd:).

Change History (2)

comment:1 Changed 8 months ago by Nicklas Nordborg

Resolution: fixed
Status: newclosed

In 6524:

Fixes #1356: Return results for all genotypes when the query include some fields

comment:2 Changed 8 months ago by Nicklas Nordborg

Summary: Return results for all genotypes when the query include some fieldsReturn results for all genotypes when the query include af, vd or dp fields
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