Changes between Initial Version and Version 7 of Ticket #1347


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Timestamp:
Nov 3, 2021, 1:14:48 PM (7 months ago)
Author:
Nicklas Nordborg
Comment:

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  • Ticket #1347 – Description

    initial v7  
    55 * `R1size` and `R2size` entries in the `fastq` section that can be used to verify that the complete FASTQ files have been transfered.
    66
    7  * `Library/Plate well` entry is now specifying coordinates using `A:1` format.
     7 * `Library/Plate well` entry is now specifying coordinates using `A:1` format. **Update** It was not just a formatting issue. The 'A:1' format is used when the library prep is made on 8x12 plates and the '1:1' format is used when the library prep is made on 1x8 strips. The plate format is going to be used in the normal workflow, but there may be situations when the strip format is used instead. We should model this and introduce a "LibStrip" plate type with 1x8 geometry. We can use the format of the `Library/Plate well` value to decide which plate type to use.
    88
    99 * New value in `Library/Protocol`: `TruSeq Stranded mRNA - Expression - Breast`. The `ExternalRef` annotation for the corresponding library protocol need to be updated manually in lorry.