Opened 2 years ago
Closed 2 years ago
#1336 closed enhancement (fixed)
Use the average read length from FASTQ files when calculating --mate-inner-dist parameter to Tophat
Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
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Priority: | major | Milestone: | Reggie v4.33 |
Component: | net.sf.basedb.reggie | Keywords: | |
Cc: |
Description
See #1335. If the values from the FASTQ files are available, we should use them when calculating the --mate-inner-dist
parameter instead of the ReadString
template.
Change History (2)
comment:1 Changed 2 years ago by
Summary: | Use the average read length from FASTQ files when calculating --mate-inner-dist parameter to Yophat → Use the average read length from FASTQ files when calculating --mate-inner-dist parameter to Tophat |
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comment:2 Changed 2 years ago by
Resolution: | → fixed |
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Status: | new → closed |
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