Opened 9 months ago

Closed 6 months ago

#1298 closed task (fixed)

Admin functions for the variant index

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Variant Search v1.0
Component: net.sf.basedb.varsearch Keywords:
Cc:

Description

To begin it we need a single page that display some information about the index databases:

  • Number of indexed raw bioassays and variants
  • Size of index
  • Number of waiting raw bioassays and if the list is enabled or not
  • Indexed raw bioassays that no longer exists

Some functions on that would be nice:

  • Enable/disable auto-processing on the lists
  • Full index rebuild
  • Clean index from non-existing raw bioassays

And maybe more...

Change History (10)

comment:1 Changed 9 months ago by Nicklas Nordborg

In [6160]

References #1298: Admin functions for the variant index

Added an index page for admin functions.

comment:2 Changed 9 months ago by Nicklas Nordborg

In 6161:

References #1298: Admin functions for the variant index

Added "Installation wizard" that checks and create items that are needed.

comment:3 Changed 9 months ago by Nicklas Nordborg

In 6162:

References #1298: Admin functions for the variant index

Added missing file.

comment:4 Changed 9 months ago by Nicklas Nordborg

In 6163:

References #1298: Admin functions for the variant index

Started to work on an "Index manager" page. It will currently load and display some information only.

comment:5 Changed 9 months ago by Nicklas Nordborg

In 6164:

References #1298: Admin functions for the variant index

Added a progress reporter to get information about indexing progress.

comment:6 Changed 9 months ago by Nicklas Nordborg

In [6165] [6166]

References #1298: Admin functions for the variant index

Started to implement some actions that can be performed by the admin:

  • Change the AutoProcessing annotation on the item list associated with an index
  • Clean the query cache
Last edited 9 months ago by Nicklas Nordborg (previous) (diff)

comment:7 Changed 9 months ago by Nicklas Nordborg

In 6167:

References #1298: Admin functions for the variant index

Implemented more admin function:

  • Remove non-existing raw bioassays from the index
  • Index raw bioassays in the queue

comment:8 Changed 9 months ago by Nicklas Nordborg

In 6168:

References #1298: Admin functions for the variant index

Implemented functionality for a full rebuild of the index. The index is rebuilt in a separate directory and a switch is made once it has been completed. The old index is then deleted.

comment:9 Changed 9 months ago by Nicklas Nordborg

In 6169:

References #1298: Admin functions for the variant index

Implemented functionality for deleting an index and creating a new empty index.

comment:10 Changed 6 months ago by Nicklas Nordborg

Resolution: fixed
Status: newclosed
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