Add support for sequencing with NovaSeq
Sequencing with a NovaSeq is similar to the sequencing with NextSeq and HiSeq but there are some differences that affect various parts of our pipeline:
- Different tags are used in
RunParameters.xml. We use this file and a few other files for progress reporting and detecting when a sequencing run has been completed. We also use this file to extract some information after the sequencing run which are then used when demuxing.
- Dual indexes are used for barcoding libraries. We already have support for this in the MIPs pipeline so this should probably be relatively easy to implement also for the RNASeq pipeline.
Add support for sequencing with !NovaSeq → Add support for sequencing with NovaSeq
accepted → closed