Opened 5 years ago

Closed 5 years ago

Last modified 5 years ago

#1228 closed enhancement (fixed)

Add file actions for viewing genotype and variant information

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Reggie v4.26
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

BASE 3.16 now has support for "file viewer actions" (​http://base.thep.lu.se/ticket/2199)

This will make it possible to create links to the genotype and variant information dialogs directly from the BASE pages without having to go via the "Case summary" functionality.

Change History (2)

comment:1 by Nicklas Nordborg, 5 years ago

Resolution: → fixed
Status: new → closed

In 5850:

Fixes #1228: Add file actions for viewing genotype and variant information

Added an extension that add links to file items:

  • variants-filtered.vcf that is attached to a raw bioassay (via VCF file type)
  • qc_genotype.vcf that is attached to a raw bioassay (via any-to-any link)

comment:2 by Nicklas Nordborg, 5 years ago

In 5851:

References #1228: Add file actions for viewing genotype and variant information

A new icond for VCF files.

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