Changes between Initial Version and Version 1 of Ticket #1200


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Timestamp:
Mar 23, 2020, 9:20:50 AM (5 years ago)
Author:
Nicklas Nordborg
Comment:

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  • Ticket #1200

    • Property Milestone Reggie v4.x → Reggie v4.26

  • Ticket #1200 – Description

    initial v1  
    1 When the Variant calling pipeline has been fully implemented (#1199), we also need to update the release exporter plug-in to export some of the data. Details are not yet available.
     1When the Variant calling pipeline has been fully implemented (#1199), we also need to update the release exporter plug-in to export some of the data.
     2
     3Most annotations from the `VariantCall` raw bioassay should be exported:
     4
     5 * `VariantsPassedFilter`
     6 * All `MutationSignatureXX` annotations
     7 * All `GENE_Variants` annotations
     8 * And also some common techincal annotations: `Pipeline`, `DataFilesFolder`, `Software`
     9
     10We should also export annotations from the Alignment:
     11
     12 * `CallableBases`
     13 * `VariantsRaw`
     14
     15Files:
     16 * `variants-filtered.vcf`
     17 * `variants-annotated.vcf.gz`
     18
     19