Opened 4 years ago

Last modified 4 years ago

#1200 closed enhancement

Release exporter changes due to Variant calling pipeline — at Version 1

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: critical Milestone: Reggie v4.26
Component: net.sf.basedb.reggie Keywords:
Cc:

Description (last modified by Nicklas Nordborg)

When the Variant calling pipeline has been fully implemented (#1199), we also need to update the release exporter plug-in to export some of the data.

Most annotations from the VariantCall raw bioassay should be exported:

  • VariantsPassedFilter
  • All MutationSignatureXX annotations
  • All GENE_Variants annotations
  • And also some common techincal annotations: Pipeline, DataFilesFolder, Software

We should also export annotations from the Alignment:

  • CallableBases
  • VariantsRaw

Files:

  • variants-filtered.vcf
  • variants-annotated.vcf.gz

Change History (1)

comment:1 by Nicklas Nordborg, 4 years ago

Description: modified (diff)
Milestone: Reggie v4.x → Reggie v4.26
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