Implement an "Activity log"

[Nicklas Nordborg]

It would be nice to display some more information about what is going on in the lab and on the computers the Reggie front page.

While we are re-designing the front page (#1133) we could maybe keep three columns as before and in one of them display a list of the most recent "activities". For example:

Today
13:35 12 samples has been extracted
09:22 6 specimen tubes has been registered
01:25 Sequencing of FlowCell555 completed successfully

Yesterday
16:56 Sequencing of FlowCell555 has started
14:25 Reggie was updated to version 4.23

It should be possible to merge entries of the same type that are happening on the same day. For example, if registering another specimen tube the count above would increase to '7' and the timestamp updated.

The log should be limited to some specific number (or age) of events.

The log need to survive server re-starts.

[Nicklas Nordborg]

In 5376:

References #1134: Implement an "Activity log"

Added an activity log service. Basic functionality is in place. Activities can be logged. Activities of the same type on the same day are merged to a single log entry. Log entries are saved to the static cache automatically, and reloaded if the server (or Reggie) re-starts.

The specimen tube and storage box registration have been used for testing.

The activity log is served together with the "counter" statistics and displayed in the rightmost column on the front page.

[Nicklas Nordborg]

In 5377:

References #1134: Implement an "Activity log"

Added activity logging for the installation wizard, extraction, rna/dna normalization and partion wizards.

[Nicklas Nordborg]

In 5378:

References #1134: Implement an "Activity log"

Minor re-organization on the index page to prevent the "Case summary" search box from scrolling.

[Nicklas Nordborg]

In 5379:

References #1134: Implement an "Activity log"

Added activity logging for the RNAQC wizards.

[Nicklas Nordborg]

In 5380:

References #1134: Implement an "Activity log"

Implemented filtering function for removing older activited from the log.

[Nicklas Nordborg]

In 5381:

References #1134: Implement an "Activity log"

Added activity logging for the histology wizards and changed other messages to be more alike.

[Nicklas Nordborg]

In 5382:

References #1134: Implement an "Activity log"

Added activity logging for library preparation, pooling and sequencing wizards.

[Nicklas Nordborg]

In 5384:

References #1134: Implement an "Activity log"

Added ActivityDef for easier and better generation of messages for activities. Existing code for creating activity events have been updated.

Added activities for secondary analysis.

[Nicklas Nordborg]

In 5385:

References #1134: Implement an "Activity log"

Reading and saving the activity log should now be more stable in case there are some problems.

[Nicklas Nordborg]

In 5387:

References #1134: Implement an "Activity log"

Added activity logging for referral form and patient registration and INCA import.

[Nicklas Nordborg]

In 5388:

References #1134: Implement an "Activity log"

Added an entry "Nothing yet" to the activity log if it is empty or if the first entry is not an activity for "Today".

[Nicklas Nordborg]

In 5404:

References #1134: Implement an "Activity log"

Added support for getting the activity log as an RSS feed.

[Nicklas Nordborg]

In 5412:

References #1134: Implement an "Activity log"

Found a commit() call that was disabled.

[Nicklas Nordborg]

In 5421:

References #1134: Implement an "Activity log"

Update the activity log to also store the current user and active project. This should make it possible to have different activity log for different projects (if we ever need that!).

The RSS feed that was implemented in [5404] now include an <author> tag with the user name.

[Nicklas Nordborg]

In 5422:

References #1134: Implement an "Activity log"

Use the new methods implemented in ​http://base.thep.lu.se/ticket/2176 to get the name of the user and active project.

[Nicklas Nordborg]

In [5580] (manually copied here since commit comment used incorrect ticket number):

References #1134: Implement an "Activity log"

Added name of pipeline to the "demux confirmed" event. Example:

Demux confirmed for 16 RNAseq libraries