Opened 16 years ago
Closed 15 years ago
#113 closed enhancement (fixed)
Add support for more variations of Illumina detection P-value calculations
| Reported by: | Jari Häkkinen | Owned by: | Jari Häkkinen |
|---|---|---|---|
| Priority: | major | Milestone: | Illumina package v1.4 |
| Component: | net.sf.basedb.illumina | Keywords: | |
| Cc: |
Description (last modified by )
The methods used by BeadStudio is described in the BeadStudio Gene Expression Module (GX)
The whole genome beadchips use one algorithm whereas DASL, miRNA, VeraCode DASL, and Focused Arrays all use another algorithm.
Currently, the plug-in features only the WG version.
Change History (7)
comment:1 by , 16 years ago
| Milestone: | → Illumina package v1.x |
|---|
comment:2 by , 15 years ago
| Description: | modified (diff) |
|---|---|
| Milestone: | Illumina package v1.x → Illumina package v1.4 |
| Owner: | changed from to |
| Status: | new → assigned |
| Summary: | Add support for Illumina focused arrays in Illumina detection P-value plug-in → Add support for more variation of Illumina detection P-value caluclations plug-in |
comment:3 by , 15 years ago
| Summary: | Add support for more variation of Illumina detection P-value caluclations plug-in → Add support for more variations of Illumina detection P-value caluclations |
|---|
comment:4 by , 15 years ago
comment:5 by , 15 years ago
| Summary: | Add support for more variations of Illumina detection P-value caluclations → Add support for more variations of Illumina detection P-value calculations |
|---|
comment:6 by , 15 years ago
| Description: | modified (diff) |
|---|
comment:7 by , 15 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
(In [1167]) Fixes #113. The code change in changeset:1114 is valid, fixed docs.
Note:
See TracTickets
for help on using tickets.
(In [1114]) Addresses #113. The Pvalue calculation is in place. Need to figure details of std and average calculations.