Opened 4 years ago

Closed 4 years ago

#1108 closed task (fixed)

Fix INCA statistics

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Reggie v4.22
Component: not classified Keywords:
Cc:

Description

The INCA statistics wizard is currently broken due to changes in #1104. Since we need the new import reporting functionality as soon as possible we decided to postpone fixing the statistics wizard until a later release.

Change History (11)

comment:1 Changed 4 years ago by Nicklas Nordborg

Milestone: Reggie v4.x → Reggie v4.22
Owner: changed from Jari Häkkinen to Nicklas Nordborg
Status: new → accepted

comment:2 Changed 4 years ago by Nicklas Nordborg

In 5287:

References #1108: Fix INCA statistics

Started to change the wizard. It will currently only make a very basic check of the selected file.

comment:3 Changed 4 years ago by Nicklas Nordborg

In 5288:

References #1108: Fix INCA statistics

Implemented more checks:

  • Columns that are required for statistics
  • Laterality check
  • Valid data values


Implemented filtering on date and cancer type.

Fixed an issue with a strange error message if an exception happened before the INCA file had been completely uploaded to the server.

comment:4 Changed 4 years ago by Nicklas Nordborg

In 5289:

References #1108: Fix INCA statistics

Started to implement the report file for statistics.

comment:5 Changed 4 years ago by Nicklas Nordborg

In 5290:

References #1108: Fix INCA statistics

Implemented actual statistics calculations for some variables. The result is added to the report file.

comment:6 Changed 4 years ago by Nicklas Nordborg

In 5291:

References #1108: Fix INCA statistics

Statistics is now reported back to the wizard and displayed as a table.

comment:7 Changed 4 years ago by Nicklas Nordborg

In 5292:

References #1108: Fix INCA statistics

Implemented database mapping for statistics so that we can divide between cases with and cases without specimen. The database mapping is only done with checkType=fullstatistics

The wizard has been updated to work with simple and full statistics. The difference is the database mapping mentioned above. Old and unused code has been removed.

comment:8 Changed 4 years ago by Nicklas Nordborg

In 5293:

References #1108: Fix INCA statistics

Creating an output CSV after the statistics has been calculated. It is in the same format as the output CSV after the import, but contains only the columns used in the statistics.

comment:9 Changed 4 years ago by Nicklas Nordborg

In 5294:

References #1108: Fix INCA statistics

Removing old code that is no longer used.

comment:10 Changed 4 years ago by Nicklas Nordborg

In 5302:

References #1108: Fix INCA statistics

Added percentage values to the table.

comment:11 Changed 4 years ago by Nicklas Nordborg

Resolution: → fixed
Status: accepted → closed
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