Opened 16 years ago

Closed 16 years ago

Last modified 16 years ago

#110 closed enhancement (fixed)

Illumina detection P-value plug-in

Reported by: Jari Häkkinen Owned by: Jari Häkkinen
Priority: major Milestone: Illumina package v1.1
Component: net.sf.basedb.illumina Keywords:
Cc:

Description

Add a plug-in to calculate detection P-values for bead-sets. The method used by BeadStudio is described in the BeadStudio Gene Expression Module (GX)

Change History (6)

comment:1 by Jari Häkkinen, 16 years ago

Owner: changed from Nicklas Nordborg to Jari Häkkinen
Status: new → assigned

comment:2 by Jari Häkkinen, 16 years ago

(In [681]) Addresses #110. Single sample Whole Genome BeadChips detection P-value calculation implemented.

comment:3 by Jari Häkkinen, 16 years ago

(In [686]) Addresses #110.

comment:4 by Jari Häkkinen, 16 years ago

(In [689]) Addresses #110. Added MAD based outlier removal of negative control beadsets.

comment:5 by Jari Häkkinen, 16 years ago

Resolution: → fixed
Status: assigned → closed

(In [698]) Fixes #110.

comment:6 by Nicklas Nordborg, 16 years ago

(In [808]) References #110: Illumina detection P-value plug-in

Static method in ExtraValueType should be access in a static way.

Note: See TracTickets for help on using tickets.