| | 2 | |
| | 3 | * Implement possibility to flag and add/modify comments when scheduling re-extractions. Since it takes about a week or more to get the result it is good to be able keep some information about why the re-extraction was made in the first place. |
| | 4 | |
| | 5 | * Introduce a `DoNotUse` flag that should be set on the top-most item that is considered incorrect. The top-most item is typically a Specimen, Lysate, RNA or Library. The flag should then be copied downstreams to all child items. A `DoNotUseComment` that goes along with the flag is probably also a good idea. |
| | 6 | |
| | 7 | * Alignments that are flagged as `DoNotUse` should be removed from the `Flagged alignments` list and disabled for future genotype checks. Remaining items in the list should be checked again and items that no longer get any genotype warning should also be removed. |
| | 8 | |
| | 9 | * A lot of other wizards need to be updated to check the `DoNotUse` flag. For example: |
| | 10 | - When manually selecting RNA for library preparation a warning should be displayed. |
| | 11 | - Demuxing should skip flagged libraries. The rules for generating warnings, etc. need to be updated. |
| | 12 | - and more... |
