Opened 6 years ago
Closed 6 years ago
#1004 closed enhancement (fixed)
Auto-confirmation after demux should start Tophat/Hisat jobs independently of each other
| Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
|---|---|---|---|
| Priority: | minor | Milestone: | Reggie v4.13 |
| Component: | net.sf.basedb.reggie | Keywords: | |
| Cc: |
Description
The DemuxAutoConfirmer code that starts Tophat and Hisat alignment jobs is a single piece of code. If there is a problem no jobs will created. This should be changed so that if the problem is in the Hisat-specific part only the Hisat jobs should be affected, and vice versa.
Change History (2)
comment:1 Changed 6 years ago by
| Status: | new → assigned |
|---|
comment:2 Changed 6 years ago by
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
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(In [4623]) Fixes #1004: Auto-confirmation after demux should start Tophat/Hisat? jobs independently of each other
The code in
DemuxAutoConfirmerhas been updated to use two separate transactions for starting Tophat and Hisat jobs. Unless there is some common error (eg. cluster is down) failure to register jobs for one pipeline should not affect the other pipeline.