Auto-confirmation after demux should start Tophat/Hisat jobs independently of each other
|Reported by:||Nicklas Nordborg||Owned by:||Nicklas Nordborg|
DemuxAutoConfirmer code that starts Tophat and Hisat alignment jobs is a single piece of code. If there is a problem no jobs will created. This should be changed so that if the problem is in the Hisat-specific part only the Hisat jobs should be affected, and vice versa.