Opened 6 years ago

Closed 6 years ago

#736 closed enhancement (fixed)

Some HE glass may be stained with something else than HE

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Reggie v3.1
Component: net.sf.basedb.reggie Keywords:
Cc:

Description (last modified by Nicklas Nordborg)

The number of HE glass slides created are registered with the 'Register HE glass' wizard. It has been assumed that all slides are stained with HE but it would be useful to also stain with something else (eg. p63).

We do not have to make any major modifications to the wizard. To keep things simple the naming convention for glass slides will not be changed (eg. all slides will be named HE* even if they are not stained with HE). The number of slides created are entered as usual. In the last step where a box position and comment can be entered an additional field is added which is a selection list for the new IHC annotation (enumeration). No value means that the slide is a HE slide. To begin with the only other value should be 'p63'. The annotation should be stored on the slide level.

The scoring wizard should also be updated. All slides should still be visible. The IHC annotation should be printed somewhere on the slide information and slides with this annotation should not be selectable for GoodStain or scoring.

Change History (6)

comment:1 Changed 6 years ago by Nicklas Nordborg

Description: modified (diff)

comment:2 Changed 6 years ago by Nicklas Nordborg

(In [3121]) References #736: Some HE glass may be stained with something else than HE

Added IHC annotation which is an enumeration that current allow 'p63' as the only value.

Updated the HE glass registration wizard so that it is possible to select an IHC value for each slide (in the 3-rd step). HE stained slides should not select anything here.

comment:3 Changed 6 years ago by johan

Perhaps add a check in the last step of 'Register HE glass' wizard to disable the option to select IHC annotation for those slides that contain best stain samples. This would avoid the situation when the scoring wizard is presented with a slide that contain 'good' stain samples and has IHC annotation.

comment:4 Changed 6 years ago by Nicklas Nordborg

(In [3125]) References #736: Some HE glass may be stained with something else than HE

Only enable the 'IHC' selection list for glass slides which do not have any GoodStain:ed sample in the 'Register HE glass' wizard.

In the 'Score HE glass' wizard:

  • Display IHC annotation in glass description area.
  • Do not allow selection/scoring of samples on glass with IHC annotation

comment:5 Changed 6 years ago by Nicklas Nordborg

(In [3126]) References #736: Some HE glass may be stained with something else than HE

Updating some help texts and set background icon to 'microscope' on the IHC slide when scoring.

comment:6 Changed 6 years ago by Nicklas Nordborg

Resolution: fixed
Status: newclosed
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