Opened 6 years ago

Closed 6 years ago

#659 closed enhancement (fixed)

Do not trust fragement size calculated by bowtie if number of used fragments is too low

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Reggie v2.16.1
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

The FragmentSizeAvg and FragmentSizeStd should be set to -1 if the number of fragments is less than 20000

Change History (1)

comment:1 Changed 6 years ago by Nicklas Nordborg

Resolution: fixed
Status: newclosed

(In [2791]) Fixes #659: Do not trust fragement size calculated by bowtie if number of used fragments is too low

Added configuration option <bowtie-fragment-count-limit> (default 20000) which is used to check the fragments size values.

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