#265 closed task (fixed)
Investigate and fix issues with external files introduced in BASE 2.16
| Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
|---|---|---|---|
| Priority: | critical | Milestone: | Illumina package v1.6 |
| Component: | net.sf.basedb.illumina | Keywords: | |
| Cc: |
Description
BASE 2.16 adds support for file items that are stored externally. See http://base.thep.lu.se/ticket/1485
We need to investigate how this affects the Illumina plug-ins and fix issues that we find. Some import plug-ins probably use the file size but this may not be known for external files.
Change History (2)
comment:1 by , 14 years ago
| Resolution: | → fixed |
|---|---|
| Status: | new → closed |
comment:2 by , 14 years ago
| Milestone: | Illumina package v1.x → Illumina package v1.6 |
|---|
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(In [1226]) Fixes #265: Investigate and fix issues with external files introduced in BASE 2.16
There was a check that BGX and SNP files had location=Location.PRIMARY and throwed an exception if not. It now checks isDownloadable() instead. There was also a progress reporting issue in the BeadSummaryImporter for files with unknown size.