Opened 15 years ago

Closed 15 years ago

Last modified 3 years ago

#206 closed enhancement (fixed)

net.sf.basedb.normalizers: Make qQuantileNormalization handle missing values

Reported by: Jari Häkkinen Owned by: Jari Häkkinen
Priority: major Milestone: ZZ Normalization package v1.1
Component: net.sf.basedb.normalizers Keywords:
Cc:

Description


Change History (7)

comment:1 by Jari Häkkinen, 15 years ago

Status: new → assigned

comment:2 by Jari Häkkinen, 15 years ago

Summary: net.sf.basedb.normalizers: Make qQuantileNormalization hanlde missing values → net.sf.basedb.normalizers: Make qQuantileNormalization handle missing values

comment:3 by Jari Häkkinen, 15 years ago

(In [1043]) Addresses #118 and #206. This code produces the same result as the preivous code but fails miserably with missing values.

comment:4 by Jari Häkkinen, 15 years ago

(In [1044]) Addresses #118 and #206. If no assay data is given use the average of all assays as reference ... fixed create_target for this case.

comment:5 by Jari Häkkinen, 15 years ago

Resolution: → fixed
Status: assigned → closed

(In [1047]) Fixes #206. Missing values in reference now works. Each probe with no welldefined value in the reference are ignored.

comment:6 by Jari Häkkinen, 15 years ago

(In [1049]) Addresses #206. Last commit destroyed nan fixing in changeset:1045 for some cases of reference selection, the nan fix is now restored.

comment:7 by Nicklas Nordborg, 3 years ago

Milestone: Normalization package v1.1 → ZZ Normalization package v1.1

Milestone renamed

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