Opened 9 years ago

Closed 9 years ago

Last modified 9 years ago

#110 closed enhancement (fixed)

Illumina detection P-value plug-in

Reported by: jari Owned by: jari
Priority: major Milestone: Illumina package v1.1
Component: net.sf.basedb.illumina Keywords:
Cc:

Description

Add a plug-in to calculate detection P-values for bead-sets. The method used by BeadStudio is described in the BeadStudio Gene Expression Module (GX)

Change History (6)

comment:1 Changed 9 years ago by jari

  • Owner changed from nicklas to jari
  • Status changed from new to assigned

comment:2 Changed 9 years ago by jari

(In [681]) Addresses #110. Single sample Whole Genome BeadChips? detection P-value calculation implemented.

comment:3 Changed 9 years ago by jari

(In [686]) Addresses #110.

comment:4 Changed 9 years ago by jari

(In [689]) Addresses #110. Added MAD based outlier removal of negative control beadsets.

comment:5 Changed 9 years ago by jari

  • Resolution set to fixed
  • Status changed from assigned to closed

(In [698]) Fixes #110.

comment:6 Changed 9 years ago by nicklas

(In [808]) References #110: Illumina detection P-value plug-in

Static method in ExtraValueType? should be access in a static way.

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