Changes between Initial Version and Version 1 of uk.ac.scri.batchimporter


Ignore:
Timestamp:
May 24, 2007, 5:16:47 PM (17 years ago)
Author:
Jari Häkkinen
Comment:

Renaming BatchDataImporter

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  • uk.ac.scri.batchimporter

    v1 v1  
     1= BatchDataImporter =
     2
     3== Short description ==
     4
     5Imports batches of data files into BASE, creating a single !RawbioAssay for each file.
     6
     7== Long description ==
     8
     9The !BatchDataImporter plug-in imports a batch of individual data files into an experiment chosen by the user. It is set up to be invoked from the detail view of a single Experiment where an import tab lets the user select a zip file that contains all the data files. On invocation it proceeds to create a new subdirectory in the user's raw data directory -- this subdirectory is named after the zip file minus the extension plus a time stamp in the format ddMMyy_hhmmss. The zip file is unzipped into this directory. For each file in the directory, a single !RawBioAssay object is then created, and once all the data files have been processed in this way, the !RawBioAssay objects just created are attached to the Experiment where the import is run from. In the case of Affymetrix data, the raw data is kept in the cel files and these are linked to the !RawBioAssay. For all other data formats, the raw data is physically inserted into the database.
     10
     11
     12== Documentation ==
     13
     14The [http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/scri/batchimporter/README.txt README.txt] contains information on how to install and use the plug-in.
     15
     16
     17== Maintenance plan ==
     18
     19Bugs will be fixed. Volunteers welcome to help extend the plug-in.
     20
     21
     22== License ==
     23
     24[http://www.gnu.org/copyleft/gpl.html GNU General Public License version 2].
     25
     26
     27== Author ==
     28
     29Micha Bayer - Plant Bioinformatics Group, Scottish Crop Research Institute [[br]]
     30http://www.scri.ac.uk [[BR]]
     31http://www.scri.sari.ac.uk/MichaBayer.htm [[BR]]
     32micha dot bayer at scri dot ac dot uk
     33
     34
     35== Download ==
     36plugin jar file: [http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/scri/batchimporter/batchimporter.jar?format=raw batchimporter.jar][[BR]]
     37source code: [http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/scri/batchimporter/src SVN][[BR]]
     38