Changes between Version 71 and Version 72 of uk.ac.ebi.Tab2MageImporter


Ignore:
Timestamp:
Nov 28, 2007, 5:08:46 PM (17 years ago)
Author:
basepluginswiki
Comment:

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  • uk.ac.ebi.Tab2MageImporter

    v71 v72  
    2727[http://lev.thep.lu.se/trac/baseplugins/wiki/uk.ac.ebi.AnnotationTypeCvImporter AnnotationTypeCvImporter Plugin] – Required for loading annotation types.  The plugin must have a proper configuration defined to import an annotation type file created by the Tab2MageImporter plugin when parsing the tab2mage file.[[BR]]
    2828
    29 '''Please''' ''ensure that you have used all the plugins above appropriately configured, before running Tab2Mage importer. Read the README file in the documentation section for further details.''
     29'''Please''' ''ensure that you have used all the plugins above appropriately, before running Tab2Mage importer. Read the README file in the documentation section for further details.''
    3030
    3131Click [http://lev.thep.lu.se/trac/baseplugins/wiki/uk.ac.ebi.AnnotationTypeCvImporter AnnotationTypeCvImporter] for further information on Annotation Type and Cv Importer plugin and for other plugins, please read base2 documentation.
    … …  
    3838– for batch uploading affymetrix array designs.  Useful to upload all array designs used in an experiment in one go before running the Tab2Mage Importer.[[BR]]
    3939
    40 If  you want to use messaging, mail.jar and activation. jar is required- these jar files should be downloaded and copied to your base installation class path  /web-inf/lib folder. [[BR]]
     40== Documentation ==
     41The README files below contains information on how to install and use the plug-in.
    4142
     43||'''Installation and Use'''|| '''Known Issues''' ||'''Sample Tab2Mage Import Work Flow'''||'''Pooling Note'''||
     44||[http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/README.txt README.txt]||[http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/README-KnownIssuesandFeatures.txt README.txt]||[http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/simplied%20process.txt Affymetrix]||[http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/pooling.txt README.txt] ||
    4245
    43 == Documentation ==
    44 
    45 The [http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/README.txt README.txt] contains information on how to install and use the plug-in.
    46 
    47 Sample Tab2Mage Import Work Flow: [http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/simplied%20process.txt Affymetrix ]
    4846==== FAQs ====
    4947
    5048[http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/Importer%20FAQ.txt Tab2Mage Import FAQ].
    5149
    52 ==== Sample Tab2Mage Spreadsheets ====
     50==== Tab2Mage Spreadsheets ====
    5351
    54 [http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/tab2mage-%20affymetrix.txt?format=raw  Affymetrix],
    55 [http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/ta2mage-%20agilent.txt?format=raw Agilent] and [http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/tab2mage-%20genepix.txt?format=raw Genepix]
     52||'''Rules for Creating Spreadsheet'''|| '''Sample Spreadsheets''' ||
     53||[http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/tab2mage-spreadsheet-rules.txt Rules]||[http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/tab2mage-%20affymetrix.txt?format=raw  Affymetrix]|[http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/ta2mage-%20agilent.txt?format=raw Agilent]|[http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/tab2mage-%20genepix.txt?format=raw Genepix]||
    5654
    5755== Maintenance plan ==
    5856
    5957Bugs will be fixed. Volunteers welcome to help extend the plug-in.
    60 
    61 == License ==
    62 
    63 [http://www.gnu.org/copyleft/gpl.html GNU General Public License version 2].
    64 
    6558
    6659== Author ==
    … …  
    8780
    8881== Download ==
    89 plugin jar file: [http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/Tab2MageImporter.jar?format=raw Tab2MageImporter.jar][[BR]]
    9082
    91 Sample archives: [http://www.ebi.ac.uk/~oyeniran/pages/download.html#archives Genepix, Agilent and Affymetrix]
     83||'''Version''' ||'''Plugin jar file'''||'''Dependent jars'''||'''Change Log'''||
     84||2||[http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/Tab2MageImporter.jar?format=raw Tab2MageImporter.jar]||[http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/lib/bloader.jar?format=raw bloader.jar] | [http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageExporter/ebi-plugins-utils.jar?format=raw ebi-plugins-utils.jar] | [http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/lib/AnnotationTypeCvImporter.jar?format=raw AnnotationTypeCvImporter.jar] [[BR]] [http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/lib/mail.jar?format=raw mail.jar] | [http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/lib/activation.jar?format=raw activation.jar]||[http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/ChangeLog.txt Change Log]||
     85||1||[http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/Tab2MageImporter-1.0.jar?format=raw Tab2MageImporter-1.0.jar]|| || ||
     86'''Sample archives''': [http://www.ebi.ac.uk/~oyeniran/pages/download.html#archives Genepix, Agilent, Affymetrix and GenePix with Pooling]
     87
     88== License ==
     89
     90[http://www.gnu.org/copyleft/gpl.html GNU General Public License version 2].
     91