Annotation Type and Cv Importer

Short description

Import annotation type and controlled vocabularies from a simple flat file into BASE

Long description

This plugin accepts a list of annotation type and controlled vocabularies in a simple flat file and imports the file into base. The plugin is started from BASE 2 Annotation Type list page. Administrate - > Types - >Annotation Types. To execute the plugin, click on the import tab and follow subsequent instructions from the wizard. Existing annotation type can either be unchanged or updated depending on the user's choice whilst executing the plugin.

Prerequisites

Base 2.0 and above

Documentation

The ​README.txt contains information on how to install and use the plug-in.

Sample Flat File

​sampleimportfile.txt

Sample Configuration File

This configuration file ​annotationtypecvimporter.xml can be imported into BASE to create the plugin configuration for this importer.

Maintenance plan

Bugs will be fixed.

License

​GNU General Public License version 2.

Author

Dominic Oyeniran – European Bioinformatics Institute, Cambridge, UK
​http://www.ebi.ac.uk
​Project Page
email: oyeniran@…

Philippe Rocca-Serra – European Bioinformatics Institute, Cambridge, UK, Net-Project technical coordinator.
email: rocca@…

Download

plugin jar file: ​AnnotationTypeCvImporter.jar

Dependent jar

utils jar file: ​ebi-plugins-utils.jar

Source code

​SVN