Affymetrix Array Design Batch Importer

Short description

Imports affymetrix array design batches into BASE.

Long description

This plugin imports array designs for affymetrix - single channel- array design only. The entry point for this plugin in base 2 is the Array Design list page. Array LIMS->Array Designs. The array designs must be provided in a zip archive. The plugins will do the unpacking, creates the array designs using the array design file name and also attach the cdf, clf or bpmap file to the newly created array design. If an array design already exists, the plug-in skips the cdf, bpmap or clf file. Please note that only a user with an administrator role may execute this plugin.

Prerequisites

Base 2.2 and above

Documentation

The ​README.txt contains information on how to install and use the plug-in.

Maintenance plan

Bugs will be fixed and the plugin could be extended for 2 channel experiment too.

License

​GNU General Public License version 2.

Author

Dominic Oyeniran – European Bioinformatics Institute, Cambridge, UK
​http://www.ebi.ac.uk
​Project Page
email: oyeniran@…

Philippe Rocca-Serra – European Bioinformatics Institute, Cambridge, UK, Net-Project technical coordinator.
email: rocca@…

​Credit.txt.

Download

plugin jar file: ​AffyArrayDesignBatchImporter.jar

Dependent jar

utils jar file: ​ebi-plugins-utils.jar