Changes between Version 6 and Version 7 of se.lu.onk.IlluminaSNPNormalization

Timestamp:

Jun 2, 2008, 2:19:18 PM (17 years ago)

Author:

markus

Comment:

--

se.lu.onk.IlluminaSNPNormalization

@@ -27 +27 @@
   ||...||...||...||...||...||...||...||...||...||
 
-  The data extracted from !BeadStudio needs to be split into a separate file for each sample using the script ''split_beadstudio_samples.pl''
+  The data extracted from !BeadStudio needs to be split into a separate file for each sample using the script ''split_beadstudio_samples.pl''.
 
   {{{  
-  ./split_beadstudio_samples.pl --beadstudio_file example/example_beadstudio_data.txt
+  ./split_beadstudio_samples.pl --beadstudio_file=example/example_beadstudio_data.txt
   }}}
   where ''example_beadstudio_data.txt'' is a file exported from !BeadStudio in the format described above.
@@ -50 +50 @@
   }}}
 
-  generates one data file per sample in the tQN subdirectory ''normalized'' for further analysis using PennCNV. Alternatives for ''--output_format'' are ''QuantiSNP'', which generates one data file per sample for further analysis with QuantiSNP and ''!BeadStudio'', which is the default argument generating the default ''tQN_beadstudio.txt'' file with data for all samples.
+  generates one data file per sample in the tQN subdirectory ''normalized'' for further analysis using PennCNV. Alternatives for ''--output_format'' are ''QuantiSNP'', which generates one data file per sample for further analysis with QuantiSNP and ''!BeadStudio'', which is the default argument generating the default ''tQN_beadstudio.txt'' file with data for all samples. Beadchip types for which there is a cluster file in the tQN subdirectory ''lib'' are supported by tQN.