Changes between Version 57 and Version 58 of se.lu.onk.IlluminaSNPNormalization

Timestamp:

Aug 25, 2011, 10:12:31 AM (13 years ago)

Author:

markus

Comment:

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se.lu.onk.IlluminaSNPNormalization

@@ -6 +6 @@
 
 === News ===
+
+ * Aug. 25, 2011. Added support for additional beadchips. tQN normalized cluster files for humanOmni2_5M-quad and humanOmniExpress based on Illumina's !HapMap data sets have been released. Download cluster files for [http://cbbp.thep.lu.se/~markus/software/tQN/humanOmni2_5M-quad_tQN_clusters.zip?format=raw humanOmni2_5M-quad] and [http://cbbp.thep.lu.se/~markus/software/tQN/humanOmniExpress_tQN_clusters.zip?format=raw humanOmniExpress]. See special note for these platforms under download tQN below.
+
 
  * Sept. 29, 2009. Added support for additional beadchip. tQN normalized cluster file for human1M-omnia based on Illumina's !HapMap data set has been released. Download [http://cbbp.thep.lu.se/~markus/software/tQN/human1M-omnia_tQN_clusters.zip?format=raw here].
@@ -37 +40 @@
 
 [http://cbbp.thep.lu.se/~markus/software/tQN/human1M-omnia_tQN_clusters.zip?format=raw Download tQN cluster file for human1M-omnia]. This additional cluster file is not part of the tQN-1.1.2 release. Unzip and put the resulting txt-file in the subdirectory ''lib'' in your tQN installation if you want to use tQN with human1M-omnia beadchips.   
+
+[http://cbbp.thep.lu.se/~markus/software/tQN/humanOmni2_5M-quad_tQN_clusters.zip?format=raw Download tQN cluster file for humanOmni2_5M-quad]. This additional cluster file is not part of the tQN-1.1.2 release. Unzip and put the resulting txt-file in the subdirectory ''lib'' in your tQN installation if you want to use tQN with humanOmni2_5-quad beadchips. Special note: We have observed considerable assymetry in BAF estimates with this platform. In our experience tQN improves data from this platform but not to the same extent as with earlier beadchips.    
+
+[http://cbbp.thep.lu.se/~markus/software/tQN/humanOmniExpress_tQN_clusters.zip?format=raw Download tQN cluster file for humanOmniExpress]. This additional cluster file is not part of the tQN-1.1.2 release. Unzip and put the resulting txt-file in the subdirectory ''lib'' in your tQN installation if you want to use tQN with humanOmniExpress beadchips. Special note: We have observed considerable assymetry in BAF estimates with this platform. In our experience tQN improves data from this platform but not to the same extent as with earlier beadchips.    
 
 === Supplemental data ===