Changes between Version 31 and Version 32 of se.lu.onk.BAFsegmentation
- Timestamp:
- Mar 13, 2009, 6:15:28 PM (16 years ago)
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se.lu.onk.BAFsegmentation
v31 v32 10 10 11 11 === News === 12 13 * Mar. 13, 2009. BAFsegmentation 1.1.2 release. This is a minor bug-fix release. Fixed bugs include errors in documentation (default has never been to remove cnv probes), handling of when there are no probes for entire chromosomes, and 'split_samples.pl' can now handle locales where comma denotes the decimal point. 14 12 15 * Feb. 6, 2009. BAFsegmentation 1.1.1 release. This is a minor bug-fix release fixing a bug in bookmark files generated for import into !BeadStudio. 13 16 … … 31 34 === Download BAFsegmentation === 32 35 33 [http://cbbp.thep.lu.se/~markus/software/BAFsegmentation/BAFsegmentation-1.1. 1.zip?format=raw Download the latest stand-alone release (BAFsegmentation 1.1.1).]36 [http://cbbp.thep.lu.se/~markus/software/BAFsegmentation/BAFsegmentation-1.1.2.zip?format=raw Download the latest stand-alone release (BAFsegmentation 1.1.2).] 34 37 35 38 === Supplemental Data === … … 79 82 perl split_samples.pl --data_file=example/example_beadstudio_data.txt 80 83 }}} 81 where ''example_beadstudio_data.txt'' is a file exported from !BeadStudio in the format described above. 84 where ''example_beadstudio_data.txt'' is a file exported from !BeadStudio in the format described above. With some language settings !BeadStudio exports files with commas (,) as decimal points; 'split_samples.pl' replaces all commas (,) in data columns with points (.) the 'split_samples.pl' results files. 82 85 83 86 This script will generate one file per sample together with a file ''sample_names.txt'' in the BAFsegmentation subdirectory ''extracted''. These files are used when BAFsegmentation is run and can be deleted once the samples are normalized. … … 91 94 }}} 92 95 93 This command will perform BAFsegmentation on the samples in the BAFsegmentation subdirectory ''extracted'' that are specified in the file ''sample_names.txt''. If you want to perform BAFsegmentation on a subset of samples you can edit ''sample_names.txt'' accordingly. 96 This command will perform BAFsegmentation on the samples in the BAFsegmentation subdirectory ''extracted'' that are specified in the file ''sample_names.txt''. If you want to perform BAFsegmentation on a subset of samples you can edit ''sample_names.txt'' accordingly. Note that BAFsegmentation requires points (.) for decimal points. 94 97 95 98