Changes between Version 24 and Version 25 of se.lu.onk.BAFsegmentation

Timestamp:

Oct 17, 2008, 4:33:44 PM (16 years ago)

Author:

markus

Comment:

--

se.lu.onk.BAFsegmentation

@@ -7 +7 @@
 ''Genome Biology'' '''9''':R136 (2008)[[BR]]
 [http://genomebiology.com/2008/9/9/R136/abstract Abstract]
+[http://genomebiology.com/2008/9/9/R136 Full text]
+
+=== News ===
+
+ * Oct. 17, 2008. BAFsegmentation 1.1.0 released. New features include:
+   * Improved plotting, including a new across assays plot of regions of allelic imbalance for each chromosome and whole genome plots for each assay.
+   * Improved removal of noisy and non-informative homozygous SNPs.
+   * Support for segmenting BAF data normalized with [wiki:se.lu.onk.IlluminaSNPNormalization tQN] (tQN version 1.1.0 or higher).
+
+=== Future plans ===
+
+ * Adaptation of BAFsegmentation to samples having 100% tumor content for example cell-lines.
+ * Integration of log R ratio into calling of regions and their type.
 
 === License ===
@@ -14 +27 @@
 === Download BAFsegmentation ===
 
-[http://cbbp.thep.lu.se/~markus/software/BAFsegmentation/BAFsegmentation-1.0.0.zip?format=raw Download the latest stand-alone release (BAFsegmentation 1.0.0).]
+[http://cbbp.thep.lu.se/~markus/software/BAFsegmentation/BAFsegmentation-1.1.0.zip?format=raw Download the latest stand-alone release (BAFsegmentation 1.1.0).]
 
 === Supplemental Data ===
@@ -24 +37 @@
 
 === How to use BAFsegmentation ===
+
+''Recommendations''
+ For Infinium data, we recommend using BAFsegmentation with data normalized using 
 
 ''Requirements''