Changes between Version 12 and Version 13 of se.lu.onk.BAFsegmentation


Ignore:
Timestamp:
Sep 17, 2008, 11:40:19 AM (14 years ago)
Author:
markus
Comment:

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  • se.lu.onk.BAFsegmentation

    v12 v13  
    1515
    1616The method will be downloadable as a stand-alone version soon.
     17
     18=== Supplemental Data ===
     19
     20 * The plots referred to in additional data file 4 in the manuscript are available [http://cbbp.thep.lu.se/~markus/publications/papers/BAFsegmentation_supplemental_data.zip here].
     21 * The simulated data set used in the publication is available [http://cbbp.thep.lu.se/~markus/software/BAFsegmentation/SimulatedTumorData.zip here].
     22 * Infinium data for four matched tumor-normal pairs and a dilution series of a tumor cell line mixed with its paired normal cell line are available in NCBI's Gene Expression Omnibus with accession [http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE11976 GSE11976].
     23
    1724
    1825=== How to use BAFsegmentation ===
     
    6471  This command will perform BAFsegmentation on the samples in the BAFsegmentation subdirectory ''extracted'' that are specified in the file ''sample_names.txt''. If you want to perform BAFsegmentation on a subset of samples you can edit ''sample_names.txt'' accordingly. The segmented data is stored in the BAFsegmentation subdirectory ''segmented''.
    6572
    66 === Supplemental Data ===
    67 
    68  * The plots referred to in additional data file 4 in the manuscript are available [http://cbbp.thep.lu.se/~markus/publications/papers/BAFsegmentation_supplemental_data.zip here].
    69  * The simulated data set used in the publication is available [http://cbbp.thep.lu.se/~markus/software/BAFsegmentation/SimulatedTumorData.zip here]
    70  * Infinium data for four matched tumor-normal pairs and a dilution series of a tumor cell line mixed with its paired normal cell line are available in NCBI's Gene Expression Omnibus with accession [http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE11976 GSE11976].
    71 
    7273=== Contact ===
    7374