| 8 | | The search engine takes the filtered VCF files (`variants-filtered.vcf`), raw/annotated VCF files (`variants-annotated.vcf`) and genotyping VCF files (`genotype_*.vcf`) that are linked to the `VariantCall` raw bioassays and creates a searchable index for all variants. The indexing and search functionality is provided by Apache Lucene. |
| | 8 | The search engine has support for the following: |
| | 9 | |
| | 10 | * From the RNAseq pipeline: |
| | 11 | - Filtered VCF files (`variants-filtered.vcf`) |
| | 12 | - Raw annotated VCF files (`variants-annotated.vcf`) |
| | 13 | * From the WGS pipeline: |
| | 14 | - Filtered VCF files (`variants-somatic.vcf.gz`) |
| | 15 | * From the Genotyping pipeline: |
| | 16 | - !OncoArray VCF files (`genotypes_all.vcf.gz`) |
| | 17 | - Imputed VCF files (`imputed_phase3_beagle.vcf.gz`) |
| | 18 | |
| | 19 | The indexing and search functionality is provided by Apache Lucene. |
