Changes between Version 5 and Version 6 of net.sf.basedb.varsearch/using

Timestamp:

Feb 1, 2022, 11:59:11 AM (3 years ago)

Author:

Nicklas Nordborg

Comment:

Added note about limitations in the OncoArray index

net.sf.basedb.varsearch/using

@@ -99 +99 @@
 
 
+== Notes about the !OncoArray genotyping index ==
+
+This index also behaves differently than the other indexes. Since there are almost 500 thousands variants that have been genotyped for each raw bioassay it is not possible to create a single index with all information. It has to be split into one index for the "design" that contain information and gene annotations about the 500 thousand variants, and one index that enumerates the variants for each of the three possible genotypes. The index doesn't contain any information about allele frequency or other information that is per raw bioassay and variant.
+
+Thus, `gt` is the only genotype-related field that is searchable and it is only possible to use it once in the query.
+
 == Timeouts ==