Changes between Version 2 and Version 3 of net.sf.basedb.varsearch/using


Ignore:
Timestamp:
May 25, 2021, 11:37:24 AM (3 years ago)
Author:
Nicklas Nordborg
Comment:

Added information about setting a timeout for a query

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  • net.sf.basedb.varsearch/using

    v2 v3  
    8585 * `af:`: Allele frequency of the alternate allele.
    8686
     87== Timeouts ==
     88
     89The query against the Lucene database has a default timeout of 30 seconds. If complete results and information about the variants can't be loaded in that timeout the query will stop and only the results that have been gathered so far are used when matching against raw bioassays. A message is displayed in the column header:
     90
     91{{{
     92The query did not finish within 30 seconds. Showing results based on 4.3M hits
     93out of 56.1M total hits.
     94}}}
     95
     96It is possible to change the timeout by appending `/TT` to the query string, where `TT` is the desired timeout. For example: `chr1/120` will increase the timeout to 120 seconds when searching for all variants in chromosome 1. The timeout is not allowed to be longer than 600 seconds.