Changes between Version 1 and Version 2 of net.sf.basedb.reggie/notes433


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Timestamp:
Sep 29, 2021, 9:34:49 AM (3 years ago)
Author:
Nicklas Nordborg
Comment:

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  • net.sf.basedb.reggie/notes433

    v1 v2  
    66
    77The `readlength_averager.awk` script is a new script that must be installed (see #1335). Install the script at a suitable location and make sure to update reggie-config.xml with the new path.
     8
     9=== 2. Create a new Tophat software alignment item ===
     10
     11A new software item for the Tophat alignment is needed since the --mate-inner-dist parameter is calculated base on `ReadLengthAvgR1` and `ReadLengthAvgR2` annotations instead of `ReadString`. The new software items should be included as a project default and the old software item should be removed and SCAN-B access should be changed to Read-only (used to be Read-Use).