Changes between Initial Version and Version 1 of net.sf.basedb.reggie/notes410

Apr 28, 2017, 2:56:12 PM (5 years ago)
Nicklas Nordborg

Started to write update notes for Reggie 4.10


  • net.sf.basedb.reggie/notes410

    v1 v1  
     1= Updating to Reggie 4.10 =
     3The following changes can be made after installing Reggie 4.10.
     5=== Update the !MultPieces annotation for Lysate items ===
     7All '''Lysate''' items with a creation date after YYYY-MM-DD that has no value for the !MultPieces annotation
     8should be update to `MultPieces=false`. It should be fairly simple to filter out the lysates in the web interface
     9and then export the "Name" column. Open the exported file in a spreadsheet and add a second column for the
     10!MultPieces annotation. Use the annotation importer to update the annotation.
     12=== Set !ReferenceDate and !ReferenceDateSource on all Case items ===
     14The !ReferenceDate and !ReferenceDateSource are new annotations that should be set on
     15all existing Case item. There are four cases that depends on what information we already
     16have about the case.
     18 1. All cases that has a value for the INCA_A030DiaDat annotation should be update to:
     19    `ReferenceDate=INCA_A030DiaDat` and `ReferenceDateSource=IncaDiagnosisDate`.
     20 2. TODO
     21 3. Remaining cases that has a value for the !ConsentDate annotation should be updated to:
     22    `ReferenceDate=ConsentDate` and `ReferenceDateSource=ConsentDate`.
     23 4. All remaining cases should be updated to:
     24    `ReferenceDate=Registered` and `ReferenceDateSource=RegistrationDate`.
     261, 3 and 4 can be done with a simple export/import operation with the help of a spreadsheet to
     27fill in the !ReferenceDateSource value.