Changes between Version 2 and Version 3 of net.sf.basedb.reggie/notes32


Ignore:
Timestamp:
Jun 10, 2021, 11:00:25 AM (3 years ago)
Author:
Jari Häkkinen
Comment:

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  • net.sf.basedb.reggie/notes32

    v2 v3  
    33== 1. Picard and pipeline scripts should be updated  ==
    44
    5 Ticket #742 (Detect tiles with empty barcode files) will not work without upgrading to Picard 1.128-4 on the Open grid cluster. See http://dev.thep.lu.se/basehacks/wiki/Picard for downloading and more information.
     5Ticket #742 (Detect tiles with empty barcode files) will not work without upgrading to Picard 1.128-4 on the Open grid cluster. See https://dev.thep.lu.se/basehacks/wiki/Picard for downloading and more information.
    66
    7 Note that this Picard version no longer ships each tool as a separate JAR file. All tools are packages together in `picard.jar`. Due to this change the command line to start Picard has changed (see http://dev.thep.lu.se/basehacks/wiki/Picard/notes3) and the pipeline scripts (http://baseplugins.thep.lu.se/browser/other/pipeline/trunk) must also be updated (trunk revision 3099 or later). Note that the new pipeline scripts doesn't work with earlier version of Picard.
     7Note that this Picard version no longer ships each tool as a separate JAR file. All tools are packages together in `picard.jar`. Due to this change the command line to start Picard has changed (see https://dev.thep.lu.se/basehacks/wiki/Picard/notes3) and the pipeline scripts (http://baseplugins.thep.lu.se/browser/other/pipeline/trunk) must also be updated (trunk revision 3099 or later). Note that the new pipeline scripts doesn't work with earlier version of Picard.
    88
    99== 2. New role: `PrepCurator` ==