Changes between Initial Version and Version 1 of net.sf.basedb.reggie/notes32


Ignore:
Timestamp:
Mar 6, 2015, 9:17:35 AM (10 years ago)
Author:
Nicklas Nordborg
Comment:

Update notes for Reggie 3.2

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  • net.sf.basedb.reggie/notes32

    v1 v1  
     1= Updating to Reggie 3.2 =
     2
     3== 1. Picard and pipeline scripts should be updated  ==
     4
     5Ticket #742 (Detect tiles with empty barcode files) will not work without upgrading to Picard 1.128-4 on the Open grid cluster. See http://dev.thep.lu.se/basehacks/wiki/Picard for downloading and more information.
     6
     7Note that this Picard version no longer ships each tool as a separate JAR file. All tools are packages together in `picard.jar`. Due to this change the command line to start Picard has changed (see http://dev.thep.lu.se/basehacks/wiki/Picard/notes3) and the pipeline scripts must also be updated (trunk revision later than 3099). Note that the new pipeline scripts doesn't work with earlier version of Picard.
     8
     9== 2. New role: `PrepCurator` ==
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     11This role is needed to use the Flagged RNA wizard (#455). Assign users to this role as needed.