Changes between Initial Version and Version 1 of net.sf.basedb.reggie/notes217


Ignore:
Timestamp:
Oct 23, 2014, 8:40:04 AM (8 years ago)
Author:
Nicklas Nordborg
Comment:

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  • net.sf.basedb.reggie/notes217

    v1 v1  
     1= Updating to Reggie 2.17 =
     2
     3== 1. Configuring reporter annotations and raw data properties for Cufflinks ==
     4
     5The Tomcat server should be shut down before this update. After unpacking the Reggie tar file, you
     6will find several configuration files in the `/config` directory.
     7
     8 * '''reggie-ogs-hosts.xml:''' Copy to `<base-dir>/www/WEB-INF/classes`.
     9   This file is for setting up a connection to a cluster with
     10   the Open Grid Scheduler.
     11   
     12 * '''reggie-exteded-properties.xml:''' Copy to `<base-dir>/www/WEB-INF/classes/extended-properties`.
     13   Defines additional reporter annotation columns. Note that this file define ''chromosome'' which
     14   is also defined in the standard BASE distribution. It must be removed from either this file
     15   or from the `<base-dir>/www/WEB-INF/classes/extended-propertis.xml` file.
     16   
     17 * '''reggie-raw-data-types.xml:''' Copy to `<base-dir>/www/WEB-INF/classes/raw-data-types`
     18   Define additional raw data columns for the Cufflinks raw data type. Note that this file
     19   re-define the ''Cufflinks'' raw data type which must be removed from the
     20   NOTE! The Cufflinks raw data type must be removed from the default
     21   `<base-dir>/www/WEB-INF/classes/raw-data-types.xml`
     22
     23When all files are in place and all modifications has been made, the `updatedb.sh` script must be executed.
     24After that Tomcat can be restarted and installation proceed as normal.
     25