Changes between Version 6 and Version 7 of net.sf.basedb.meludi.notes1_5_0

Timestamp:

Nov 2, 2016, 7:52:04 AM (8 years ago)

Author:

olle

Comment:

Added more information on BASE projects to be used with MeLuDI 1.5.0

net.sf.basedb.meludi.notes1_5_0

@@ -15 +15 @@
 === b. Create BASE projects to be used with MeLuDI ===
 
- i. Select BASE menu View -> Projects. Add all projects, that are intended to be used with MeLuDI. It is recommended to use complete and descriptive names, since the projects are to be selected from their names in BASE "Recently used projects" menu and the project names will be included in headers of generated protocols and reports (names may include spaces). Abbreviations that are commonly used, are of course eligible.
- ii. Make a note of the project names, since they are needed for the MeLuDI configuration file.
+ i. Select BASE menu View -> Projects. Add all projects, that are intended to be used initially with MeLuDI. It is recommended to use complete and descriptive names, since the projects are to be selected from their names in BASE "Recently used projects" menu and the project names will be included in headers of generated protocols and reports (names may include spaces). Abbreviations that are commonly used, are of course eligible.
+ ii. Make sure that Protocol and other BASE items needed for the MeLuDI pipeline, are available for the BASE projects to be used with MeLuDI. If several projects should use the same item, there is no need to store multiple copies of the latter, but one item can be shared to all the projects.
+ iii. Make a note of the project names, since they are needed for the MeLuDI configuration file.
 
 === c. Information and recommendations regarding new MeLuDI configuration file `meludi-config.xml` ===
@@ -64 +65 @@
 || `specimen-type-default` || Primary tumor or metastasis. || <empty string> (unknown) ||
 || `specimen-input-type-default` || The form in which a specimen is delivered. || <empty string> (unknown) ||
-Note: The "`name`" tag value is used by MeLuDI to identify the project item in BASE, so it is essential that it corresponds exactly to the project item name in BASE.
+Notes:[[BR]]1. The "`name`" tag value is used by MeLuDI to identify the project item in BASE, so it is essential that it corresponds exactly to the project item name in BASE.[[BR]]2. It is allowed to configure MeLuDI for projects, before the latter are created in BASE. A project configuration will only be used, when a BASE project is selected as active.
 
 The menu option values for project focus, specimen type, and specimen input type to use for default choices are: